McVicker_Shanna
Project
75 + 75
Lane 1 (R1 + R2)
75 + 75
Lane 2 (R1 + R2)
1,116,194,504
Polonies
93.3%
Q30
N/A
Index Assignment
167.413
Assigned Yield (Gb)
8 + 8
Lane 1 (I1 + I2)
8 + 8
Lane 2 (I1 + I2)
N/A
Unexpected Pairs
Index Percentiles
Percentile Sample I1 I2 Polonies % Polonies
5th EP_3xCyt_R3 CCTGATTG AACTGAGC 53,563,206 4.7987
50th EP_Veh_R2 TCAGGCTT CGCATGAT 62,120,178 5.5654
95th EP_Veh_R3 ATATGCGC CTGATCGT 70,915,821 6.3534
All Indices
# Sample I1 I2 Polonies % Polonies
1 EP_Veh_R3 ATATGCGC CTGATCGT 70,915,821 6.3534
2 No_EP_Veh_R1 CGACGTTA ATCCAGAG 69,765,043 6.2503
3 No_EP_INFa_R1 CCGTAAGA TGGACTCT 67,283,008 6.0279
4 No_EP_INFa_R3 TGGTACAG ACTCTCGA 64,772,987 5.8030
5 EP_3xCyt_R1 CACCTGTT GCTATCCT 63,858,499 5.7211
6 No_EP_3xCyt_R1 TACGCCTT AGAGTAGC 63,779,410 5.7140
7 EP_3xCyt_R2 CCTTGTAG TTCCAAGG 63,769,432 5.7131
8 EP_INFa_R2 GAACATCG CTTGTCGA 63,655,373 5.7029
9 No_EP_3xCyt_R3 AACCGTTC TGAGCTAG 62,781,907 5.6246
10 EP_Veh_R2 TCAGGCTT CGCATGAT 62,120,178 5.5654
11 EP_Nfa_R1 CTTCGACT GCAAGATC 62,033,508 5.5576
12 No_EP_Veh_R3 TAACCGGT GAGACGAT 60,857,774 5.4523
13 No_EP_INFa_R2 GTTCTCGT ACGGAACA 59,965,330 5.3723
14 EP_Veh_R1 ATCACACG TACGCTAC 59,023,563 5.2879
15 No_EP_3xCyt_R2 AGAACGAG CGGCTAAT 58,273,890 5.2208
16 No_EP_Veh_R2 TGCTTCCA ATCGATCG 55,762,425 4.9958
17 EP_INFa_R3 ATGCACGA GACGATCT 54,013,150 4.8390
18 EP_3xCyt_R3 CCTGATTG AACTGAGC 53,563,206 4.7987
41.9
Mean Q
94.5%
Q30
83.4%
Q40
N/A
Reads eliminated
75.0
Mean read length
N/A
Trim type
N/A
Min read length